Publications
Recent work from the cluster.
1662 publications
All publications.
Oct 2026
Mapping antibody sequences and effector functions across spatial niches
Corral S, Pino MJ, Engblom C
Current opinion in immunology
Oct 2026
A Distinct Immune Signature Characterizes Cirrhosis in Ethiopian Individuals With Chronic HBV Infection
MacLeod J, Gudissa FG, Jeylan A, Berhe N, Desalegn H, Rossvoll L, Johannessen A, Björkström NK, Reikvam DH, Niehrs A
Alimentary pharmacology & therapeutics
Sept 2026
Fifteen challenges for generative AI applications to cell biology
Dupire L, Khan AA, Karaletsos T, Kelley S, Lundberg E, Ma J, Paull E, Quake SR, Rabadan R, Rowan C, Sims P, Tavazoie S et al.
Cell
Sept 2026
Resolving cell lineages and gene functions in the developing mouse gastrointestinal tract using in utero transduction
Liu Z, Padmanabhan K, He J, Hector K, Semsch B, Sun J, Knoflach V, Giatrellis S, Lorentz J, Dallakyan K, Göritz C, Andersson ER et al.
Proceedings of the National Academy of Sciences of the United States of America
Sept 2026
Norway spruce spatiotemporal programs of conifer reproductive development
Saarenpää S, Zivi N, Masarapu Y, Mishra LS, Rouot S, Orozco A, Herrera-Foessel SA, Ahlgren Kalman T, Liva M, Yadav S, Englund M, Street NR et al.
Cell
Sept 2026
Spatiotemporal regulation of DNA repair proteins between Golgi and nucleus maintains genome stability
Galea G, Kuodyte K, Khan MM, Thul PJ, Neumann B, Lundberg E, Pepperkok R
The Journal of cell biology
Sept 2026
Reliability of resting heart rate measurements in atrial fibrillation
Persson AP, McIntyre WF, Glotzer T, Andrade JG, Conen D, Fedorowski A, Måneheim A, Lundeberg JE, Juhlin T, Edegran A, Grotek-Cuprjak A, Healey JS et al.
Journal of electrocardiology
Sept 2026
A single-cell multi-omic atlas of the human pancreas reveals potential for cellular plasticity across development, health, and disease
Mereu E, Balboa D, Liebig J, Gonzalez-Herrero A, Casals AM, Mardamshina M, Mollandin F, Schicktanz F, Sudy A, Tosti L, van Agen M, Vandenbempt V et al.
Cell metabolism
Sept 2026
Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover
Kastriti ME, Maksimov D, Krupinova J, Utkina M, Beltsevich D, Roslyakova A, Glazova O, Kaziakhmedova S, Ryabova A, Kuznetsova A, Shcherbakova A, Bondarenko E et al.
Nature genetics
Sept 2026
Targeting progressive multiple sclerosis: Toward mechanism-informed precision medicine
Piehl F, Castelo-Branco G, Jagodic M, Olsson T
Journal of internal medicine
Sept 2026
Local cues, local killers: human natural killer cells across tissues
Niehrs A, Zeqiraj K, Ponzetta A, Björkström NK
Trends in immunology
Aug 2026
Aug 2026
Human growth plates house resting zone sub-populations with features of quiescent stem cells
Avijgan M, López-Pérez AR, Galicia LA, Marchan-Alvarez JG, Sudupe L, Zhou R, Nazaraliyev A, Andrusivová Ž, Larsson L, Miranda P, Mamand DR, Zhao Y et al.
Bone research
Aug 2026
Cortical development dynamics across autism spectrum disorder mouse models
Schwarz LA, Dotter CP, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S et al.
Nature
Aug 2026
Clonal analysis for understanding fate biases in developing embryos
Isaev S, Adameyko I
Current opinion in genetics & development
Aug 2026
Decoding the complexity of intestinal immunity with spatial transcriptomics
Suárez-Álvarez M, Ulloa MA, Villablanca EJ
Current opinion in immunology
Jul 2026
Golgi organization regulates stem cell function in the small intestine
Belevich I, Porcile L, Sola-Carvajal A, Grommisch D, Annusvar K, Heinz P, Das S, Webb AT, Andersson S, Pentinmikko N, Villablanca EJ, Goldenring JR et al.
Nature communications
Jul 2026
Spatial transcriptomics differences of histopathological growth patterns in colorectal cancer liver metastases
Escriva Conde M, Andersson A, Vermeulen P, Nilsson M, Nyström H
British journal of cancer
Jul 2026
The immunological landscape of the area postrema in neuromyelitis optica spectrum disorders
Yu Q, Takai Y, Yamazaki N, Brandl S, Mair KM, Bouderlique T, Kastriti ME, Adameyko I, Höftberger R, Reindl M, Bauer J, Bradl M
Brain pathology (Zurich, Switzerland)
Jul 2026
Embryonic and postnatal macrophages are necessary for proper tooth development and homeostasis
Gonzalez Lopez M, Katsura KA, Neves VCM, Soldatov R, Lavicky J, Azam M, Kavkova M, Cigosova K, Temsamrit B, Bonnardel J, Gong H, Nemec KM et al.
Nature communications
Jul 2026
A uniform tissue-clearing framework and mesoSPIM-ultra enable cm-scale single-neuron tracing
Pende M, Cregg JM, Saghafi S, Broadbent S, Avdibasic A, Roeles J, Papadopoulos SC, Seaman RP, Pende N, Mateos MS, Jamwal K, Wunch M et al.
bioRxiv : the preprint server for biology
Jul 2026
Dissecting autonomous enzymatic variability in single cells
Gnann C, Sigaeva A, Le T, Cesnik AJ, Sariyar S, Mahdessian D, Schutten R, Raghavan P, Leonetti MD, Lindskog C, Uhlén M, Axelsson U et al.
Nature communications
Jul 2026
Hallmarks of healthy cognitive aging: Inter-individual differences in aging trajectories
Abrous DN, Blin N, Boraxbekk CJ, Catheline G, Fitzsimons CP, Hilscher M, Lemoine M, Lopes LV, Maass A, Nilsson M, Nyberg L, Rasmussen LJ et al.
Ageing research reviews
Jul 2026
A comprehensive benchmark of sequence-based subcellular localization predictors for human proteins
Wefers Z, Gupta A, Ahmed N, Zhang X, Lundberg E
Nature methods
Jul 2026
A genome-scale CRISPRi perturbation atlas of human induced pluripotent stem cells
Nourreddine S, Doctor Y, Dailamy A, Lee YH, Hansen JN, Chinn R, Forget A, Polacco B, Muralidharan M, Sigaeva A, Sunder S, Pan E et al.
Nature biotechnology
Jul 2026
Technologies to measure and modulate protein subcellular localization
Leineweber W, Tei R, Mäkiniemi A, Ting A, Lundberg E
Nature reviews. Molecular cell biology
Jul 2026
Subcellular localization as a driver of protein function
Sigaeva A, Hutchings C, Cesnik A, Lilley KS, Lundberg E
Nature reviews. Molecular cell biology
Jul 2026
Hepatic flares, their immune signatures, and ALT variability after nucleos(t)ide analogue cessation in HBeAg-negative hepatitis B
Holmberg M, Niehrs A, Dalgard O, Berhe N, Desalegn H, Aleman S, Weis N, Stenstad T, Heggelund L, Samuelsen E, Karlsen LN, Lindahl K et al.
JHEP reports : innovation in hepatology
Jun 2026
Jun 2026
Sorbent-coated metal discs for time-integrated VOC sampling: A reproducible workflow coupled to SPME-GC/MS
Lundberg R, Lundeberg T, Lundeberg J, Dahlén J
MethodsX
Jun 2026
ProbeST: a custom probe design pipeline for dual host-pathogen Spatial Transcriptomics
Rouot S, van Dolderen I, Andreassen PR, Frapard S, Herrera-Foessel SA, Sounart H, Saarenpää S, Vorholt JA, Giacomello S
BMC genomics
Jun 2026
Trends in the acceptability and prevalence of intimate partner violence: Evidence from Demographic and Health Surveys, 1999-2024
Vartanova I, Eriksson K, Strimling P
PLOS global public health
Jun 2026
Molecular characterization of normal and physiologically suppressed human parathyroid glands at single-cell resolution
Glinin T, Isaev S, Shubina A, Adameyko I, Khanafshar E, Sosa JA, Koh J
Journal of the Endocrine Society
Jun 2026
Cell shapes decode molecular phenotypes in image-based spatial proteomics
Le T, Leineweber WD, Viana MP, Cesnik A, Hansen JN, Ouyang W, Rafelski SM, Lundberg E
Cell systems
Jun 2026
Transient Interferon-Driven Natural Killer Cell Activation in Acute Hepatitis C
Strunz B, Zhan Q, Khera T, Hengst J, Jankovic M, Deterding K, Niehrs A, Cornberg M, Xu CJ, Wedemeyer H, Björkström NK, HepNet Acute HCV IV Study Group
The Journal of infectious diseases
Jun 2026
Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis
Fransson J, Sorini C, Castillo F, Chi Y, He N, Suarez-Alvarez M, Ulloa MA, Morales Castro RA, Okhovat A, Sounart H, Zagami C, Cardoso RF et al.
Immunity
Jun 2026
Promoting intestinal regeneration without tumor risk in immune-mediated inflammatory diseases
Díaz-Basabe A, He N, Villablanca EJ
Trends in immunology
Jun 2026
Modeling Disease-Relevant Bile Duct Morphogenesis Defects in a Tunable In Vitro System
Caenen-Braz C, De Bressy De Guast E, Al Haj Hassan L, Iqbal A, Estrade D, Fuchs A, Bouzhir L, Andersson ER, Dupuis-Williams P
ACS biomaterials science & engineering
Jun 2026
Focal white matter lesions drive grey matter inflammation and synapse loss
de Faria O Jr, Vagionitis S, Lopez-Lopez A, Perry M, Wong JJY, Rodríguez-Kirby L, Hervé B, Varga BV, Agirre E, Ghosh S, Timmler S, Yucel M et al.
Nature
May 2026
Coral growth, retraction, defense, and regenerative strategies revealed by live microCT
Araslanova K, Kaiser M, Fetisov A, Gavrik D, Zikmund T, Abed-Navandi D, Katovský K, Kaiser J, Adameyko I
Science advances
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